PLINK v1.90b3z 64-bit (22 Nov 2015)
Options in effect:
  --file sNL4p
  --make-bed
  --out sNL4

Hostname: n0034.compute.hpc
Working directory: /hpc/hers_en/keijk/course
Start time: Wed Mar  2 14:34:43 2022

Random number seed: 1646228083
128722 MB RAM detected; reserving 64361 MB for main workspace.
Scanning .ped file... done.
Performing single-pass .bed write (711202 variants, 3488 people).
--file: sNL4-temporary.bed + sNL4-temporary.bim + sNL4-temporary.fam written.
711202 variants loaded from .bim file.
3488 people (1998 males, 1490 females) loaded from .fam.
3488 phenotype values loaded from .fam.
Using 1 thread (no multithreaded calculations invoked.
Before main variant filters, 3488 founders and 0 nonfounders present.
Calculating allele frequencies... done.
Warning: 663139 het. haploid genotypes present (see sNL4.hh ); many commands
treat these as missing.
Warning: Nonmissing nonmale Y chromosome genotype(s) present; many commands
treat these as missing.
Total genotyping rate is 0.994361.
711202 variants and 3488 people pass filters and QC.
Among remaining phenotypes, 1226 are cases and 2262 are controls.
--make-bed to sNL4.bed + sNL4.bim + sNL4.fam ... done.

End time: Wed Mar  2 14:38:45 2022