PLINK v1.90b3z 64-bit (22 Nov 2015)
Options in effect:
  --bfile sNL4_qc
  --make-bed
  --out sNL4_qced
  --remove hetfail.txt

Hostname: n0034.compute.hpc
Working directory: /hpc/hers_en/keijk/course
Start time: Wed Mar  2 15:43:15 2022

Random number seed: 1646232195
128722 MB RAM detected; reserving 64361 MB for main workspace.
625992 variants loaded from .bim file.
3430 people (1962 males, 1468 females) loaded from .fam.
3430 phenotype values loaded from .fam.
--remove: 3371 people remaining.
Using 1 thread (no multithreaded calculations invoked.
Before main variant filters, 3371 founders and 0 nonfounders present.
Calculating allele frequencies... done.
Warning: 51162 het. haploid genotypes present (see sNL4_qced.hh ); many
commands treat these as missing.
Warning: Nonmissing nonmale Y chromosome genotype(s) present; many commands
treat these as missing.
Total genotyping rate in remaining samples is 0.998289.
625992 variants and 3371 people pass filters and QC.
Among remaining phenotypes, 1192 are cases and 2179 are controls.
--make-bed to sNL4_qced.bed + sNL4_qced.bim + sNL4_qced.fam ... done.

End time: Wed Mar  2 15:43:26 2022