PLINK v1.90b3z 64-bit (22 Nov 2015)
Options in effect:
  --bfile sNL4_qced
  --keep Samples2keep.txt
  --make-bed
  --out sNL4_qced2

Hostname: n0034.compute.hpc
Working directory: /hpc/hers_en/keijk/course
Start time: Wed Mar  2 16:54:57 2022

Random number seed: 1646236497
128722 MB RAM detected; reserving 64361 MB for main workspace.
625992 variants loaded from .bim file.
3371 people (1930 males, 1441 females) loaded from .fam.
3371 phenotype values loaded from .fam.
--keep: 3293 people remaining.
Using 1 thread (no multithreaded calculations invoked.
Before main variant filters, 3293 founders and 0 nonfounders present.
Calculating allele frequencies... done.
Warning: 51070 het. haploid genotypes present (see sNL4_qced2.hh ); many
commands treat these as missing.
Warning: Nonmissing nonmale Y chromosome genotype(s) present; many commands
treat these as missing.
Total genotyping rate in remaining samples is 0.998281.
625992 variants and 3293 people pass filters and QC.
Among remaining phenotypes, 1150 are cases and 2143 are controls.
--make-bed to sNL4_qced2.bed + sNL4_qced2.bim + sNL4_qced2.fam ... done.

End time: Wed Mar  2 16:55:17 2022